# stageCD
# aerobic, acetate_acetaldehyde
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_acald_e=1 stageCD aerobic acetate_acetaldehyde
# aerobic, acetate_2-oxoglutarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_akg_e=1 stageCD aerobic acetate_2-oxoglutarate
# aerobic, acetate_ethanol
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_etoh_e=1 stageCD aerobic acetate_ethanol
# aerobic, acetate_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_fru_e=1 stageCD aerobic acetate_D-fructose
# aerobic, acetate_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_fum_e=1 stageCD aerobic acetate_fumarate
# aerobic, acetate_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_for_e=1 stageCD aerobic acetate_formate
# aerobic, acetate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic acetate_L-glutamine
# aerobic, acetate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic acetate_L-glutamate
# aerobic, acetate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic acetate_D-lactate
# aerobic, acetate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic acetate_L-malate
# aerobic, acetate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic acetate_pyruvate
# aerobic, acetate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_succ_e=1 stageCD aerobic acetate_succinate
# aerobic, acetate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_glc_e=1 stageCD aerobic acetate_D-glucose
# aerobic, acetaldehyde_2-oxoglutarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_akg_e=1 stageCD aerobic acetaldehyde_2-oxoglutarate
# aerobic, acetaldehyde_ethanol
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_etoh_e=1 stageCD aerobic acetaldehyde_ethanol
# aerobic, acetaldehyde_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_fru_e=1 stageCD aerobic acetaldehyde_D-fructose
# aerobic, acetaldehyde_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_fum_e=1 stageCD aerobic acetaldehyde_fumarate
# aerobic, acetaldehyde_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_for_e=1 stageCD aerobic acetaldehyde_formate
# aerobic, acetaldehyde_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic acetaldehyde_L-glutamine
# aerobic, acetaldehyde_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic acetaldehyde_L-glutamate
# aerobic, acetaldehyde_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic acetaldehyde_D-lactate
# aerobic, acetaldehyde_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic acetaldehyde_L-malate
# aerobic, acetaldehyde_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic acetaldehyde_pyruvate
# aerobic, acetaldehyde_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_succ_e=1 stageCD aerobic acetaldehyde_succinate
# aerobic, acetaldehyde_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_glc_e=1 stageCD aerobic acetaldehyde_D-glucose
# aerobic, 2-oxoglutarate_ethanol
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_etoh_e=1 stageCD aerobic 2-oxoglutarate_ethanol
# aerobic, 2-oxoglutarate_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_fru_e=1 stageCD aerobic 2-oxoglutarate_D-fructose
# aerobic, 2-oxoglutarate_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_fum_e=1 stageCD aerobic 2-oxoglutarate_fumarate
# aerobic, 2-oxoglutarate_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_for_e=1 stageCD aerobic 2-oxoglutarate_formate
# aerobic, 2-oxoglutarate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic 2-oxoglutarate_L-glutamine
# aerobic, 2-oxoglutarate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic 2-oxoglutarate_L-glutamate
# aerobic, 2-oxoglutarate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic 2-oxoglutarate_D-lactate
# aerobic, 2-oxoglutarate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic 2-oxoglutarate_L-malate
# aerobic, 2-oxoglutarate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic 2-oxoglutarate_pyruvate
# aerobic, 2-oxoglutarate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_succ_e=1 stageCD aerobic 2-oxoglutarate_succinate
# aerobic, 2-oxoglutarate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_glc_e=1 stageCD aerobic 2-oxoglutarate_D-glucose
# aerobic, ethanol_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_fru_e=1 stageCD aerobic ethanol_D-fructose
# aerobic, ethanol_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_fum_e=1 stageCD aerobic ethanol_fumarate
# aerobic, ethanol_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_for_e=1 stageCD aerobic ethanol_formate
# aerobic, ethanol_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic ethanol_L-glutamine
# aerobic, ethanol_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic ethanol_L-glutamate
# aerobic, ethanol_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic ethanol_D-lactate
# aerobic, ethanol_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic ethanol_L-malate
# aerobic, ethanol_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic ethanol_pyruvate
# aerobic, ethanol_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_succ_e=1 stageCD aerobic ethanol_succinate
# aerobic, ethanol_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_glc_e=1 stageCD aerobic ethanol_D-glucose
# aerobic, D-fructose_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_fum_e=1 stageCD aerobic D-fructose_fumarate
# aerobic, D-fructose_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic D-fructose_L-glutamine
# aerobic, D-fructose_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic D-fructose_L-glutamate
# aerobic, D-fructose_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic D-fructose_D-lactate
# aerobic, D-fructose_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic D-fructose_L-malate
# aerobic, D-fructose_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic D-fructose_pyruvate
# aerobic, D-fructose_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_succ_e=1 stageCD aerobic D-fructose_succinate
# aerobic, D-fructose_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_glc_e=1 stageCD aerobic D-fructose_D-glucose
# aerobic, fumarate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic fumarate_L-glutamine
# aerobic, fumarate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic fumarate_L-glutamate
# aerobic, fumarate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic fumarate_D-lactate
# aerobic, fumarate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic fumarate_L-malate
# aerobic, fumarate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic fumarate_pyruvate
# aerobic, fumarate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_succ_e=1 stageCD aerobic fumarate_succinate
# aerobic, fumarate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_glc_e=1 stageCD aerobic fumarate_D-glucose
# aerobic, formate_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_fru_e=1 stageCD aerobic formate_D-fructose
# aerobic, formate_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_fum_e=1 stageCD aerobic formate_fumarate
# aerobic, formate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic formate_L-glutamine
# aerobic, formate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic formate_L-glutamate
# aerobic, formate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic formate_D-lactate
# aerobic, formate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic formate_L-malate
# aerobic, formate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic formate_pyruvate
# aerobic, formate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_succ_e=1 stageCD aerobic formate_succinate
# aerobic, formate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_for_e=1,k_re_R_EX_glc_e=1 stageCD aerobic formate_D-glucose
# aerobic, L-glutamine_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic L-glutamine_L-glutamate
# aerobic, L-glutamine_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic L-glutamine_D-lactate
# aerobic, L-glutamine_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic L-glutamine_L-malate
# aerobic, L-glutamine_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic L-glutamine_pyruvate
# aerobic, L-glutamine_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_succ_e=1 stageCD aerobic L-glutamine_succinate
# aerobic, L-glutamate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glu_L_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic L-glutamate_D-lactate
# aerobic, L-glutamate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glu_L_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic L-glutamate_L-malate
# aerobic, L-glutamate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glu_L_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic L-glutamate_pyruvate
# aerobic, L-glutamate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glu_L_e=1,k_re_R_EX_succ_e=1 stageCD aerobic L-glutamate_succinate
# aerobic, D-lactate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_lac_D_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic D-lactate_L-malate
# aerobic, D-lactate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_lac_D_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic D-lactate_pyruvate
# aerobic, D-lactate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_lac_D_e=1,k_re_R_EX_succ_e=1 stageCD aerobic D-lactate_succinate
# aerobic, L-malate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_mal_L_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic L-malate_pyruvate
# aerobic, L-malate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_mal_L_e=1,k_re_R_EX_succ_e=1 stageCD aerobic L-malate_succinate
# aerobic, pyruvate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_pyr_e=1,k_re_R_EX_succ_e=1 stageCD aerobic pyruvate_succinate
# aerobic, D-glucose_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_gln_L_e=1 stageCD aerobic D-glucose_L-glutamine
# aerobic, D-glucose_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_glu_L_e=1 stageCD aerobic D-glucose_L-glutamate
# aerobic, D-glucose_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_lac_D_e=1 stageCD aerobic D-glucose_D-lactate
# aerobic, D-glucose_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_mal_L_e=1 stageCD aerobic D-glucose_L-malate
# aerobic, D-glucose_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_pyr_e=1 stageCD aerobic D-glucose_pyruvate
# aerobic, D-glucose_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_succ_e=1 stageCD aerobic D-glucose_succinate
# aerobic, AllOn
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_for_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_glu_L_e=1,k_re_R_EX_lac_D_e=1,k_re_R_EX_mal_L_e=1,k_re_R_EX_pyr_e=1,k_re_R_EX_succ_e=1 stageCD aerobic AllOn
# aerobic, AllOff
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=1,k_re_R_EX_ac_e=0,k_re_R_EX_acald_e=0,k_re_R_EX_akg_e=0,k_re_R_EX_etoh_e=0,k_re_R_EX_for_e=0,k_re_R_EX_fru_e=0,k_re_R_EX_fum_e=0,k_re_R_EX_glc_e=0,k_re_R_EX_gln_L_e=0,k_re_R_EX_glu_L_e=0,k_re_R_EX_lac_D_e=0,k_re_R_EX_mal_L_e=0,k_re_R_EX_pyr_e=0,k_re_R_EX_succ_e=0 stageCD aerobic AllOff
# anaerobic, acetate_acetaldehyde
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_acald_e=1 stageCD anaerobic acetate_acetaldehyde
# anaerobic, acetate_2-oxoglutarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_akg_e=1 stageCD anaerobic acetate_2-oxoglutarate
# anaerobic, acetate_ethanol
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_etoh_e=1 stageCD anaerobic acetate_ethanol
# anaerobic, acetate_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_fru_e=1 stageCD anaerobic acetate_D-fructose
# anaerobic, acetate_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_fum_e=1 stageCD anaerobic acetate_fumarate
# anaerobic, acetate_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_for_e=1 stageCD anaerobic acetate_formate
# anaerobic, acetate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic acetate_L-glutamine
# anaerobic, acetate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic acetate_L-glutamate
# anaerobic, acetate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic acetate_D-lactate
# anaerobic, acetate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic acetate_L-malate
# anaerobic, acetate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic acetate_pyruvate
# anaerobic, acetate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic acetate_succinate
# anaerobic, acetate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic acetate_D-glucose
# anaerobic, acetaldehyde_2-oxoglutarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_akg_e=1 stageCD anaerobic acetaldehyde_2-oxoglutarate
# anaerobic, acetaldehyde_ethanol
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_etoh_e=1 stageCD anaerobic acetaldehyde_ethanol
# anaerobic, acetaldehyde_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_fru_e=1 stageCD anaerobic acetaldehyde_D-fructose
# anaerobic, acetaldehyde_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_fum_e=1 stageCD anaerobic acetaldehyde_fumarate
# anaerobic, acetaldehyde_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_for_e=1 stageCD anaerobic acetaldehyde_formate
# anaerobic, acetaldehyde_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic acetaldehyde_L-glutamine
# anaerobic, acetaldehyde_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic acetaldehyde_L-glutamate
# anaerobic, acetaldehyde_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic acetaldehyde_D-lactate
# anaerobic, acetaldehyde_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic acetaldehyde_L-malate
# anaerobic, acetaldehyde_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic acetaldehyde_pyruvate
# anaerobic, acetaldehyde_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic acetaldehyde_succinate
# anaerobic, acetaldehyde_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_acald_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic acetaldehyde_D-glucose
# anaerobic, 2-oxoglutarate_ethanol
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_etoh_e=1 stageCD anaerobic 2-oxoglutarate_ethanol
# anaerobic, 2-oxoglutarate_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_fru_e=1 stageCD anaerobic 2-oxoglutarate_D-fructose
# anaerobic, 2-oxoglutarate_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_fum_e=1 stageCD anaerobic 2-oxoglutarate_fumarate
# anaerobic, 2-oxoglutarate_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_for_e=1 stageCD anaerobic 2-oxoglutarate_formate
# anaerobic, 2-oxoglutarate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic 2-oxoglutarate_L-glutamine
# anaerobic, 2-oxoglutarate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic 2-oxoglutarate_L-glutamate
# anaerobic, 2-oxoglutarate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic 2-oxoglutarate_D-lactate
# anaerobic, 2-oxoglutarate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic 2-oxoglutarate_L-malate
# anaerobic, 2-oxoglutarate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic 2-oxoglutarate_pyruvate
# anaerobic, 2-oxoglutarate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic 2-oxoglutarate_succinate
# anaerobic, 2-oxoglutarate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_akg_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic 2-oxoglutarate_D-glucose
# anaerobic, ethanol_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_fru_e=1 stageCD anaerobic ethanol_D-fructose
# anaerobic, ethanol_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_fum_e=1 stageCD anaerobic ethanol_fumarate
# anaerobic, ethanol_formate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_for_e=1 stageCD anaerobic ethanol_formate
# anaerobic, ethanol_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic ethanol_L-glutamine
# anaerobic, ethanol_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic ethanol_L-glutamate
# anaerobic, ethanol_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic ethanol_D-lactate
# anaerobic, ethanol_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic ethanol_L-malate
# anaerobic, ethanol_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic ethanol_pyruvate
# anaerobic, ethanol_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic ethanol_succinate
# anaerobic, ethanol_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_etoh_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic ethanol_D-glucose
# anaerobic, D-fructose_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_fum_e=1 stageCD anaerobic D-fructose_fumarate
# anaerobic, D-fructose_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic D-fructose_L-glutamine
# anaerobic, D-fructose_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic D-fructose_L-glutamate
# anaerobic, D-fructose_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic D-fructose_D-lactate
# anaerobic, D-fructose_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic D-fructose_L-malate
# anaerobic, D-fructose_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic D-fructose_pyruvate
# anaerobic, D-fructose_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic D-fructose_succinate
# anaerobic, D-fructose_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fru_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic D-fructose_D-glucose
# anaerobic, fumarate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic fumarate_L-glutamine
# anaerobic, fumarate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic fumarate_L-glutamate
# anaerobic, fumarate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic fumarate_D-lactate
# anaerobic, fumarate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic fumarate_L-malate
# anaerobic, fumarate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic fumarate_pyruvate
# anaerobic, fumarate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic fumarate_succinate
# anaerobic, fumarate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_fum_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic fumarate_D-glucose
# anaerobic, formate_D-fructose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_fru_e=1 stageCD anaerobic formate_D-fructose
# anaerobic, formate_fumarate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_fum_e=1 stageCD anaerobic formate_fumarate
# anaerobic, formate_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic formate_L-glutamine
# anaerobic, formate_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic formate_L-glutamate
# anaerobic, formate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic formate_D-lactate
# anaerobic, formate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic formate_L-malate
# anaerobic, formate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic formate_pyruvate
# anaerobic, formate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic formate_succinate
# anaerobic, formate_D-glucose
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_for_e=1,k_re_R_EX_glc_e=1 stageCD anaerobic formate_D-glucose
# anaerobic, L-glutamine_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_gln_L_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic L-glutamine_L-glutamate
# anaerobic, L-glutamine_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_gln_L_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic L-glutamine_D-lactate
# anaerobic, L-glutamine_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_gln_L_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic L-glutamine_L-malate
# anaerobic, L-glutamine_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_gln_L_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic L-glutamine_pyruvate
# anaerobic, L-glutamine_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_gln_L_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic L-glutamine_succinate
# anaerobic, L-glutamate_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glu_L_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic L-glutamate_D-lactate
# anaerobic, L-glutamate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glu_L_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic L-glutamate_L-malate
# anaerobic, L-glutamate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glu_L_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic L-glutamate_pyruvate
# anaerobic, L-glutamate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glu_L_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic L-glutamate_succinate
# anaerobic, D-lactate_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_lac_D_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic D-lactate_L-malate
# anaerobic, D-lactate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_lac_D_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic D-lactate_pyruvate
# anaerobic, D-lactate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_lac_D_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic D-lactate_succinate
# anaerobic, L-malate_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_mal_L_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic L-malate_pyruvate
# anaerobic, L-malate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_mal_L_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic L-malate_succinate
# anaerobic, pyruvate_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_pyr_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic pyruvate_succinate
# anaerobic, D-glucose_L-glutamine
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glc_e=1,k_re_R_EX_gln_L_e=1 stageCD anaerobic D-glucose_L-glutamine
# anaerobic, D-glucose_L-glutamate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glc_e=1,k_re_R_EX_glu_L_e=1 stageCD anaerobic D-glucose_L-glutamate
# anaerobic, D-glucose_D-lactate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glc_e=1,k_re_R_EX_lac_D_e=1 stageCD anaerobic D-glucose_D-lactate
# anaerobic, D-glucose_L-malate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glc_e=1,k_re_R_EX_mal_L_e=1 stageCD anaerobic D-glucose_L-malate
# anaerobic, D-glucose_pyruvate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glc_e=1,k_re_R_EX_pyr_e=1 stageCD anaerobic D-glucose_pyruvate
# anaerobic, D-glucose_succinate
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_glc_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic D-glucose_succinate
# anaerobic, AllOn
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=1,k_re_R_EX_acald_e=1,k_re_R_EX_akg_e=1,k_re_R_EX_etoh_e=1,k_re_R_EX_for_e=1,k_re_R_EX_fru_e=1,k_re_R_EX_fum_e=1,k_re_R_EX_glc_e=1,k_re_R_EX_gln_L_e=1,k_re_R_EX_glu_L_e=1,k_re_R_EX_lac_D_e=1,k_re_R_EX_mal_L_e=1,k_re_R_EX_pyr_e=1,k_re_R_EX_succ_e=1 stageCD anaerobic AllOn
# anaerobic, AllOff
marciez.sh ecoli_core_2010_A_tmall_meta.andl 4 1000 1000 1000 k_R_EX_h_e=0,k_re_R_EX_h_e=0,k_R_EX_h2o_e=0,k_R_EX_h_e_fix=1,k_re_R_EX_h_e_fix=1,k_R_EX_h2o_e_fix=1,k_re_R_PPS=1,k_re_R_FRUpts2=1,k_re_R_GLCpts=1,k_re_R_PPC=1,k_re_R_EX_o2_e=0,k_re_R_EX_ac_e=0,k_re_R_EX_acald_e=0,k_re_R_EX_akg_e=0,k_re_R_EX_etoh_e=0,k_re_R_EX_for_e=0,k_re_R_EX_fru_e=0,k_re_R_EX_fum_e=0,k_re_R_EX_glc_e=0,k_re_R_EX_gln_L_e=0,k_re_R_EX_glu_L_e=0,k_re_R_EX_lac_D_e=0,k_re_R_EX_mal_L_e=0,k_re_R_EX_pyr_e=0,k_re_R_EX_succ_e=0 stageCD anaerobic AllOff