EXAMPLES: Hybrid Petri Nets
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This folder contains some examples of hybrid Petri nets created using Snoopy. It includes the following examples:

NAHS12
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1. Phege T7.sphybrid 

An example of biological models that require hybrid simulation

2. Circadian_rhythm.sphybrid 

An example of the need for dynamic partitioning

BioPPN12
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1.EucaryoticCell.sphybrid

demonstrates self-modifying arcs

Others
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1.water tank.sphybrid

A classical example of HPN

2. GoutsiasModel.sphybrid

An example of easy separable models into fast and slow reactions

To open them:
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1. save the example in your computer
2. open Snoopy
3- select open from the file menu and locate the file
4- press f6 to execute the simulation
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References:
1. M Herajy and M Heiner: Hybrid Representation and Simulation of Stiff Biochemical Networks; J. Nonlinear Analysis: Hybrid Systems, 6(4):942Ð959, November 2012

2. M Herajy and M Schwarick: A Hybrid Petri Net Model of the Eukaryotic Cell Cycle; In Proc. of the 3rd International Workshop on Biological Processes & Petri Nets (BioPPN), satellite event of Petri Nets 2012, CEUR-WS.org, CEUR Workshop Proceedings, volume 852, pages 29-43, June 2012. 

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Mostafa Herajy - 10.07.2012