Selected References - Book Chapters
2010
W Marwan, C Rohr, M Heiner:
Petri nets in Snoopy: A unifying framework for the graphical display,
computational modelling, and simulation
of bacterial regulatory networks;
in Jv Helden, A Toussaint, D Thieffry (eds):
Methods in Molecular Biology - Bacterial Molecular Networks,
Humana Press, book series "Methods in Molecular Biology", Chapter 21, in production.
D Gilbert, M Heiner, R Breitling, R Orton:
Computational modelling of kinase signalling cascades;
in R Seger (Ed.):
MAP Kinase Signaling Protocols, 2nd Edition; Methods in Molecular Biology, 2010, Volume 661, Part 4, Chapter 22, 369-384.
M Heiner, R Donaldson, D Gilbert:
Petri Nets for Systems Biology;
in MS Iyengar (ed.):
Symbolic Systems Biology: Theory and Methods,
Jones & Bartlett Learning, LLC, Chapter 3, pp. 61-97, 2010.
2009
M Heiner:
Understanding Network Behaviour by Structured Representations of
Transition Invariants - A Petri Net Perspective on Systems and
Synthetic Biology;
in A Condon, D Harel, JN Kok, A Salomaa, E Winfree (eds.):
Algorithmic Bioprocesses; Springer, Natural Computing Series, pp. 367-389, 2009.
2008
M Heiner, D Gilbert, R Donaldson:
Petri Nets for Systems and Synthetic Biology;
in M Bernardo, P Degano, and G Zavattaro (eds.): SFM 2008,
Springer
LNCS 5016, pp. 215-264, 2008.
I Koch, M Heiner:
Petri Nets;
in BH Junker, F Schreiber (eds.): Biological
Network Analysis,
Wiley Book Series on Bioinformatics (Series
Eds. Yi Pan, Albert Y. Zomaya), Chapter 7, pp.
139 - 179, 2008.
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