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Sino-German Workshop on Multiscale spatial computational systems biology

latest update: March 08, 2019, at 12:50 PM

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The workshop has been jointly organised by

Fei Liu, Harbin Institute of Technology, China

Monika Heiner, Brandenburg Technical University Cottbus-Senftenberg, Germany

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Basic facts

• where: Beijing / China
• when: October 08 – 12, 2015
• Chinese Website

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Materials

• key information of all participants
• participants' geographical distribution
• programme
• picture gallery

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Acknowledgement

This workshop has been funded by the Sino-German Center for Research Promotion (Grant no. GZ1203); see public workshop report.

Slides of all presentations

Future - Trends - Open Issues in Systems Biology

• Adelinde M. Uhrmacher
  Position Statement [ slides ]
• David Gilbert
  Position Statement [ slides ]
• Ming Chen
  Position Statement [ slides ]

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German Participants

• Mary-Ann Blätke
  A Framework for Modular Biomodel Engineering [ slides ]
• Thomas Buder
  Mathematical model for pilocytic astrocytoma growth and progression provides clinical decision support [ slides ]
• Fiete Haack
  Exploring the spatio- temporal dynamics of WNT/Beta-Catenin Signaling in-silico and in-vitro [ slides ]
• Monika Heiner
  From Petri Nets to Partial Differential Equations [ slides ]
• Christian Klukas
  New approaches for analyzing multi-channel image data and post-processing of phenotypic data [ slides ]
• Heinz Koeppl
  Stochastic multi-scale models of bimolecular networks [ slides ]
• Benjamin Kormeier
  Visualization of biological networks based on a data warehouse [ slides ]
• Jens Krüger
  Molecular Simulations using Workflows and Science Gateways [ slides ]
• Xin Lai
  Mathematical modelling of the communication between alveolar macrophages and epithelial cells during Legionella pneumophila infection [ slides ]
• Adelinde M. Uhrmacher
  The Role of Domain Specific Languages For Spatial, Multi-Level Modeling and Simulation [ slides ]

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Chinese Participants

• Ming Chen
  Genome-wide multilevel spatial interactome model of rice [ slides ]
• Gang Guo
  Monte Carlo simulation of anomalous diffusion and its accuracy analysis [ slides ]
• Rui Jiang
  Identification of disease-causing single nucleotide variants in exome sequencing studies [ slides ]
• Taijiao Jiang
  Modeling influenza virus evolution in big data era [ slides ]
• Fangting Li
  The cell cycle model in budding yeast [ slides ]
• Fei Liu
  Colored Petri nets for multiscale systems biology [ slides ]
• Zujian Wu
  An integrated qualitative and quantitative biochemical model learning frame- work using evolutionary methodologies [ slides ]
• Ziding Zhang
  Understanding Plant Immunity through Integrative Network Analysis [ slides ]

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Third Country Participants

• David Gilbert
  Model checking for multiscale biological systems [ slides ]
• Mostafa Herajy
  Efficient Simulation of Hybrid Petri Nets [ slides ]
• Björn Sommer
  Immersive Cell Exploration and Membrane Modeling [ slides ]