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data structures and software dependability

computer science department

brandenburg university of technology cottbus - senftenberg

Sino-German Workshop on Multiscale spatial computational systems biology

latest update: March 08, 2019, at 12:50 PM

The workshop has been jointly organised by

Fei Liu, Harbin Institute of Technology, China

Monika Heiner, Brandenburg Technical University Cottbus-Senftenberg, Germany

Basic facts



This workshop has been funded by the Sino-German Center for Research Promotion (Grant no. GZ1203); see public workshop report.

Slides of all presentations

Future - Trends - Open Issues in Systems Biology

  • Adelinde M. Uhrmacher
    Position Statement [ slides ]
  • David Gilbert
    Position Statement [ slides ]
  • Ming Chen
    Position Statement [ slides ]

German Participants

  • Mary-Ann Blätke
    A Framework for Modular Biomodel Engineering [ slides ]
  • Thomas Buder
    Mathematical model for pilocytic astrocytoma growth and progression provides clinical decision support [ slides ]
  • Fiete Haack
    Exploring the spatio- temporal dynamics of WNT/Beta-Catenin Signaling in-silico and in-vitro [ slides ]
  • Monika Heiner
    From Petri Nets to Partial Differential Equations [ slides ]
  • Christian Klukas
    New approaches for analyzing multi-channel image data and post-processing of phenotypic data [ slides ]
  • Heinz Koeppl
    Stochastic multi-scale models of bimolecular networks [ slides ]
  • Benjamin Kormeier
    Visualization of biological networks based on a data warehouse [ slides ]
  • Jens Krüger
    Molecular Simulations using Workflows and Science Gateways [ slides ]
  • Xin Lai
    Mathematical modelling of the communication between alveolar macrophages and epithelial cells during Legionella pneumophila infection [ slides ]
  • Adelinde M. Uhrmacher
    The Role of Domain Specific Languages For Spatial, Multi-Level Modeling and Simulation [ slides ]

Chinese Participants

  • Ming Chen
    Genome-wide multilevel spatial interactome model of rice [ slides ]
  • Gang Guo
    Monte Carlo simulation of anomalous diffusion and its accuracy analysis [ slides ]
  • Rui Jiang
    Identification of disease-causing single nucleotide variants in exome sequencing studies [ slides ]
  • Taijiao Jiang
    Modeling influenza virus evolution in big data era [ slides ]
  • Fangting Li
    The cell cycle model in budding yeast [ slides ]
  • Fei Liu
    Colored Petri nets for multiscale systems biology [ slides ]
  • Zujian Wu
    An integrated qualitative and quantitative biochemical model learning frame- work using evolutionary methodologies [ slides ]
  • Ziding Zhang
    Understanding Plant Immunity through Integrative Network Analysis [ slides ]

Third Country Participants

  • David Gilbert
    Model checking for multiscale biological systems [ slides ]
  • Mostafa Herajy
    Efficient Simulation of Hybrid Petri Nets [ slides ]
  • Björn Sommer
    Immersive Cell Exploration and Membrane Modeling [ slides ]

… the end …

Any comments or questions are welcome. Please direct them to monika.heiner@b-tu.de Privacy Policy