selected references - book chapters
14 entries
2022 - 2019 - 2015 - 2014 - 2012 - 2011 - 2010 - 2009 - 2008
2022
- [LMH22]
F Liu, H Matsuno, M Heiner:
Petri Nets for Systems Biology Modelling and Analysis;
In Systems Biology Modelling and Analysis: Formal Bioinformatics Methods and Tools, (Elisabetta De Maria, Ed.), John Wiley & Sons, Inc., pages 15-34, 2022. [ doi ] [ BibTeX ]
2019
- [H19]
M Heiner:
Petri Nets for BioModel Engineering: A Personal Perspective;
In Carl Adam Petri: Ideas, Personality, Impact, (W Reisig and G Rozenberg, Eds.), Springer, Cham, pages 205–216, 2019 (first online 25 May 2019). [ url ] [ doi ] [ BibTeX ]
- [IHH19]
A Ismail, M Herajy and M Heiner:
A Graphical Approach for the Hybrid Modelling of Intracellular Calcium Dynamics Based on Coloured Hybrid Petri Nets;
In Automated Reasoning for Systems Biology and Medicine, (P Zuliani and P Liò, Eds.), Springer, Cham, pages 349–367, 2019 (first online: 12. June 2019). [ url ] [ doi ] [ BibTeX ]
2015
- [BHM15]
MA Blätke, M Heiner and W Marwan:
BioModel Engineering with Petri Nets;
In Algebraic and Discrete Mathematical Methods for Modern Biology, (R Robeva, Ed.), Elsevier Inc., pages 141–193, March 2015. [ url ] [ doi ] [ BibTeX ]
2014
- [BRHM14]
MA Blätke, C Rohr, M Heiner and W Marwan:
A Petri Net based Framework for Biomodel Engineering;
In Large-Scale Networks in Engineering and Life Sciences, (Benner, P, Findeisen, R, Flockerzi, D, Reichl, U and Sundmacher, K, Eds.), Springer, Birkhäuser Mathematics, pages 317–366, December 2014. [ doi ] [ BibTeX ]
- [LH14]
F Liu and M Heiner:
Petri Nets for Modeling and Analyzing Biochemical Reaction Networks;
In Approaches in Integrative Bioinformatics, (M Chen and R Hofestädt, Eds.), Springer, pages 245–272, 2014. [ url ] [ pdf ] [ doi ] [ BibTeX ]
2012
- [MRH12]
W Marwan, C Rohr and M Heiner:
Petri nets in Snoopy: A unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks;
In Methods in Molecular Biology – Bacterial Molecular Networks, (Jv Helden, A Toussaint and D Thieffry, Eds.), Humana Press, pages 409–437, 2012. [ pdf ] [ doi ] [ BibTeX ]
2011
- [HG11]
M Heiner and D Gilbert:
How Might Petri Nets Enhance Your Systems Biology Toolkit;
In Proc. PETRI NETS 2011, (Kristensen, LM and Petrucci, L, Eds.), Springer, pages 17–37, 2011. [ url ] [ pdf ] [ doi ] [ BibTeX ]
- [VHK11]
K Voss, M Heiner and I Koch:
Petri Nets for Steady State Analysis of Metabolic Systems;
In Biological Petri Nets, (E Wingender, Ed.) Pages 56–76, 2011 (reprint of [VHK03]). [ doi ] [ BibTeX ]
2010
- [GHBO10]
D Gilbert, M Heiner, R Breitling and R Orton:
Computation modelling of kinase signalling cascades;
In MAP Kinase Signaling Protocols, (R Seger, Ed.) Pages 369–384, 2010. [ url ] [ doi ] [ BibTeX ]
- [HDG10]
M Heiner, R Donaldson and D Gilbert:
Petri Nets for Systems Biology;
In Symbolic Systems Biology: Theory and Methods, (MS Iyengar, Ed.), Jones & Bartlett Learning, LCC, pages 61–97, 2010. [ url ] [ pdf ] [ BibTeX ]
2009
- [H09]
M Heiner:
Understanding Network Behaviour by Structured Representations of Transition Invariants – A Petri Net Perspective on Systems and Synthetic Biology;
In Algorithmic Bioprocesses, (A Condon, D Harel, JN Kok, A Salomaa and E Winfree, Eds.), Springer, pages 367–389, 2009. [ url ] [ pdf ] [ doi ] [ BibTeX ]
2008
- [HGD08]
M Heiner, D Gilbert and R Donaldson:
Petri Nets for Systems and Synthetic Biology;
In SFM 2008, (M Bernardo, P Degano and G Zavattaro, Eds.), Springer, pages 215–264, 2008. [ pdf ] [ doi ] [ BibTeX ]
- [KH08]
I Koch and M Heiner:
Petri Nets;
In Biological Network Analysis, (BH Junker and F Schreiber, Eds.), John Wiley & Sons, pages 139–179, 2008 (Series Eds. Yi Pan, Albert Y. Zomaya). [ url ] [ BibTeX ]